../../tmp/servers/virsirnadb/1717346302
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1260 | 1 | gcaaccttggtcatcaaca | 19 | |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 5687 | ................... | 5705 | 100 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 5687 | ................... | 5705 | 100 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 5687 | ................... | 5705 | 100 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 5688 | ................... | 5706 | 100 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 5687 | .........a......... | 5705 | 94 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 5687 | .........a......... | 5705 | 94 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 5687 | .................t. | 5705 | 94 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 5687 | .........a......... | 5705 | 94 |
| AB426610.1 | Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 | 6193 | ..........a.....___ | 6208 | 78 |
| U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 5685 | .....tc.a.......... | 5703 | 84 |
| AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 5690 | ..c...c.t.......... | 5708 | 84 |
| AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 2222 | ___............____ | 2233 | 63 |
| AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 3487 | .........tg...tc... | 3469 | 78 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 5685 | .....tc.a.......... | 5703 | 84 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 5685 | .....tc.a.......... | 5703 | 84 |
| AB192877.1 | Human enterovirus 90 genomic RNA, complete genome | 5691 | ..t...c.t.......... | 5709 | 84 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 5685 | .....tc.a.......... | 5703 | 84 |
| AY697460.1 | Human enterovirus 90 polyprotein gene, complete cds | 5691 | ..c..tc.c.......... | 5709 | 78 |
| AF119795.2 | Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds | 1631 | ___...........a.t._ | 1617 | 68 |
| AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 1633 | ___...........a.t._ | 1619 | 68 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 1631 | ___...........a.t._ | 1617 | 68 |
| AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 1634 | ___...........a.t._ | 1620 | 68 |
| AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 1633 | ___...........a.t._ | 1619 | 68 |
| AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 1633 | ___...........a.t._ | 1619 | 68 |
| AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 1633 | ___...........a.t._ | 1619 | 68 |
| DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 1633 | ___...........a.t._ | 1619 | 68 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 1632 | ___...........a.t._ | 1618 | 68 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 1632 | ___...........a.t._ | 1618 | 68 |
| FJ172159.1 | Human enterovirus 71 isolate NUH0075/SIN/08, complete genome | 1593 | ___...........a.t._ | 1579 | 68 |
| AB575941.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248 | 1571 | ___...........a.t._ | 1557 | 68 |
| AB575942.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369 | 1566 | ___...........a.t._ | 1552 | 68 |
| AB575948.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 1589 | ___...........a.t._ | 1575 | 68 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 1312 | ...........g.______ | 1300 | 63 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 3480 | ..........g..______ | 3468 | 63 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 3479 | ..........g..______ | 3467 | 63 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 3479 | ..........g..______ | 3467 | 63 |
| X67706.1 | Coxsackievirus B5 complete genome | 5957 | ________........... | 5967 | 57 |
| AY896762.1 | Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein | 5936 | ________........... | 5946 | 57 |
| AY843302.1 | Human enterovirus 77 strain USA/TX97-10394, complete genome | 5978 | ________........... | 5988 | 57 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 2918 | ...........________ | 2908 | 57 |
| AB501329.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 5966 | ________........... | 5976 | 57 |
| AB501330.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 5966 | ________........... | 5976 | 57 |
| AB501331.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)- | 5966 | ________........... | 5976 | 57 |
| AB501332.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)- | 5966 | ________........... | 5976 | 57 |
| HM777023.1 | Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome | 5969 | ________........... | 5979 | 57 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 5216 | _..........._______ | 5206 | 57 |
| AB575911.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 5126 | _..........._______ | 5116 | 57 |
| AB575912.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108 | 5140 | _..........._______ | 5130 | 57 |
| AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 4388 | _____...........___ | 4398 | 57 |